Gene detail

Detailed information of OS493_026973-T1 in Lophelia pertusa

Genomic Location: scaffold_142:987105...987491
NR annotation: KAJ7371327.1, ndufa8, NADH-ubiquinone oxidoreductase complex I 19kd subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8LGE7	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1
Q9SQT4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009831 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06747 all species →	CHCH	CHCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016680 all species →	Family	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8	Interproscan
IPR010625 all species →	Domain	CHCH	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13344 all species →	NADH-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03952	NDUFA8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_026973-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

282.9Max TPM

52.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	50.94	75.10
polyp at pH7 6	18	18	51.21	70.23
coral polyp · control treatment	16	16	65.85	282.86
coral polyp · oil and dispersant treatment	16	16	51.00	270.59
coral polyp · oil treatment	16	16	56.00	77.43
coral polyp · dispersant treatment	16	16	27.48	42.75
Polyp	10	10	72.84	111.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.38
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.41
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.94
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	282.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	270.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	111.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	87.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	80.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	78.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	76.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	73.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	63.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	61.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	55.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	39.21

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.