Gene detail

Detailed information of OS493_027001-T1 in Lophelia pertusa

Genomic Location: scaffold_143:427797...445950
NR annotation: KAJ7356075.1, Protein abhd12b [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08C93	Lysophosphatidylserine lipase ABHD12 OS=Danio rerio OX=7955 GN=abhd12 PE=2 SV=1
Q8N2K0	Lysophosphatidylserine lipase ABHD12 OS=Homo sapiens OX=9606 GN=ABHD12 PE=1 SV=2
Q6AYT7	Lysophosphatidylserine lipase ABHD12 OS=Rattus norvegicus OX=10116 GN=Abhd12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004746 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12146 all species →	Hydrolase_4	Serine aminopeptidase, S33	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR022742 all species →	Domain	Serine aminopeptidase, S33	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12277 all species →	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004622 all species →	Molecular Function	lysophospholipase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006660 all species →	Biological Process	phosphatidylserine catabolic process	Interproscan
GO:0047372 all species →	Molecular Function	monoacylglycerol lipase activity	Interproscan
GO:0052651 all species →	Biological Process	monoacylglycerol catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027001-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027001-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

16.5Max TPM

4.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.85	6.13
polyp at pH7 6	18	16	3.40	8.67
coral polyp · control treatment	16	16	6.25	13.67
coral polyp · oil and dispersant treatment	16	16	4.00	7.41
coral polyp · oil treatment	16	16	5.17	9.85
coral polyp · dispersant treatment	16	15	4.85	16.53
Polyp	10	8	3.43	8.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.