Gene detail

Detailed information of OS493_027004-T1 in Lophelia pertusa

Genomic Location: scaffold_143:483236...486206
NR annotation: KAJ7356078.1, hypothetical protein OS493_027004 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006223 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR036366 all species →	Homologous_superfamily	PGBD superfamily	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan

PANTHER

No PANTHER signature was detected for OS493_027004-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_027004-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027004-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027004-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

525.9Max TPM

108.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.85	54.12
polyp at pH7 6	18	18	34.31	58.01
coral polyp · control treatment	16	16	152.34	465.51
coral polyp · oil and dispersant treatment	16	16	209.57	525.93
coral polyp · oil treatment	16	16	113.82	242.59
coral polyp · dispersant treatment	16	16	166.68	413.06
Polyp	10	9	35.00	161.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	465.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	235.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	209.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	164.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	154.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.80
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	525.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	428.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	403.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	259.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	233.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	231.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	189.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	153.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	129.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	413.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	389.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	274.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	239.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	171.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	165.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	115.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	112.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	161.65
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	54.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.53
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.