Gene detail

Detailed information of OS493_027013-T1 in Lophelia pertusa

Genomic Location: scaffold_143:548378...557677
NR annotation: KAJ7356086.1, Abscission/NoCut checkpoint regulator [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DAZ9	Abscission/NoCut checkpoint regulator OS=Mus musculus OX=10090 GN=Zfyve19 PE=1 SV=2
Q96K21	Abscission/NoCut checkpoint regulator OS=Homo sapiens OX=9606 GN=ZFYVE19 PE=1 SV=3
A0A0D1E015	FYVE zinc finger domain protein UPA1 OS=Mycosarcoma maydis OX=5270 GN=UPA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004168 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR044553 all species →	Domain	ANCHR, B-box-type 1 zinc finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46603 all species →	ABSCISSION/NOCUT CHECKPOINT REGULATOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0009838 all species →	Biological Process	abscission	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032154 all species →	Cellular Component	cleavage furrow	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0044878 all species →	Biological Process	mitotic cytokinesis checkpoint signaling	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24778	ZFYVE19, ANCHR; abscission/NoCut checkpoint regulator	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027013-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.1Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.34	22.89
polyp at pH7 6	18	18	11.98	34.82
coral polyp · control treatment	16	16	9.86	37.11
coral polyp · oil and dispersant treatment	16	16	5.84	16.69
coral polyp · oil treatment	16	16	8.31	13.68
coral polyp · dispersant treatment	16	16	4.74	8.34
Polyp	10	10	15.45	31.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.