Gene detail

Detailed information of OS493_027043-T1 in Lophelia pertusa

Genomic Location: scaffold_144:138436...148990
NR annotation: KAJ7327353.1, Transmembrane protein 33 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57088	Transmembrane protein 33 OS=Homo sapiens OX=9606 GN=TMEM33 PE=1 SV=2
Q9Z142	Transmembrane protein 33 OS=Rattus norvegicus OX=10116 GN=Tmem33 PE=2 SV=1
Q9CR67	Transmembrane protein 33 OS=Mus musculus OX=10090 GN=Tmem33 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006803 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03661 all species →	TMEM33_Pom33	Transmembrane protein 33/Nucleoporin POM33	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005344 all species →	Family	TMEM33/Pom33 family	Interproscan
IPR051645 all species →	Family	PER33/POM33 transmembrane regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12703 all species →	TRANSMEMBRANE PROTEIN 33	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0061024 all species →	Biological Process	membrane organization	Interproscan
GO:0071786 all species →	Biological Process	endoplasmic reticulum tubular network organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20724	TMEM33; transmembrane protein 33	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027043-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

141.4Max TPM

30.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.46	19.20
polyp at pH7 6	18	18	18.95	28.47
coral polyp · control treatment	16	16	38.39	90.22
coral polyp · oil and dispersant treatment	16	16	47.64	100.48
coral polyp · oil treatment	16	16	27.09	43.43
coral polyp · dispersant treatment	16	16	43.57	141.35
Polyp	10	10	21.76	41.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.90
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	28.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	24.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.42

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.