Gene detail

Detailed information of OS493_027051-T1 in Lophelia pertusa

Genomic Location: scaffold_144:246309...263838
NR annotation: KAJ7327361.1, WD repeat-containing protein 17 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_027051-T1

ATGGATGGTGGAGTTGGGTTGTATGATTTAGGGAAACGGAAATGGAGCTTTCTTAGAGACATGGGACATATAGAGACAATATTTGATTGCAAGTTCAAGCCTGAGAGTCCAGACTTGTTAGCTACGGCATCATTTGATGGGACAATCAAAGTCTGGGATGTCAACACCATGACTGCCGTTCATTCTTCTCCTGGGAATGAAGGAATAATTTATGCTCTTTCATGGGCACCTGGAGATGTTAATTGTATATGTGGAGCAACAGCGAAGCATGGAGTATTTATATGGGACATAGCCAAAGAAAAAATAATCAAGAGATTTACTGAGCATGGAAAGCACAACATTTACAATGTGAGCTGGAATCACAAGGATTCACGGAGAATCGCTTCCTGCAGTGCAGATGGATCATGTGTTGTGAGACAAGTGGATGGAACTTTGATCAAAAGATACAAACACCCTGGACCGGTGTACGGCTGTGACTGGAGTCTCAACAACAGAGATATGATTGCGACAGGTTGTGAAGATAAATGTGTCAGGGTGTTTTATGTTGCCGCAAGTACAGATCTTCCTTTGAAGATATTCTCTGGTCATACAGCAAAGATCTTCCATGTGAAGTGGAGTCCTATAAGAGAAGCGATTCTCTGTAGTGGCTCTGATGATGGCACCATAAAAGTCTGGGATTACACTGAGGATTCATGTGTGCACACATTAGAAGGGAGCTGGGACCATGCAATTAGAATTTGGGACACAAGAGATGGATCATGTTTAGAAGCTGTGTTAGACCATGGTGCAGATGTCTATGGCTTGACTTGTCACAGATACAGACCTTTCACTATCGCATCTTGTTCTCGTGATTCCACTGTCAGAATCTGGTGTCTGTCTCATTTGGCGTGTTCCTTACAGATTGATGTGCTGGCTAAGAGACCATTGGATGACATTGTAACCAACAATACTGAAACAGCCATGTCATCTGGAGGTGTGCCTCTGTTAAATGGAAGAGTTTCTCGTGAATTGAAAGCAAGTGTGGCAGTCAAAGGAGAAGCGGCTCACTTGTCAGCAATTAAACTCCTCTCAGACTTCTTTACACCTCCGTGTGGAGCAAGGAACTTGTGGGACTTGGTGTTAATTGTGCGGGATGGCGACGACAGTTTGTTACCAGTGTCTTACAGCAAAGGGATCATACATACAAAACATCTTGTCCAGTACAGAGCATCAGAAGCACAAGAATTAGAAACAGTGCGAGCTTTATCAGGCAGAAAAGGAGGTTTGATGTCCAAGAGAGAAGATAGAATCAGAGAAGCAGCAGGTCTTCATGTCAAGATTGGTCAACTACAGAGATATTGTGAACTCATGGTCGAGCTGGGCGAGTGGGACAGGGCACTCGCTATGGCTCCTGGAGTGTCATTAGATTATTGGAGAGAGCTGATGGAGAGACGAACCACTCAGCTCATGAGAGAAGATGACGACGCCGCTGTCCCTTACTGTGCGTCGCTAGGAGATGTGACCAAGCTCGTTTCATTCTTCACGTCACGTGGTCAGCTTCAAGACGCCCTATTGGTTGCGCAGGTTGCGTGCGAGGGAGGGCTGTCCTTACCACAGAAAAAGGAGACGAAAGCTCTTGATCTGAAGAAAAACGACATCTTACCTTCCTTGATAAATCACATGACTGACGAGAACAAGGGTCTTCTTCAGTCCACAAGCACTACGTTAGCAGACTGGTATTTCTACAGTGGGCAGCCTGTGCTGGCAGCTTGCTGTCACTTAGCTGTTGGAGACATCAAGTTCGCTTTGTCGAAACTCATTCGAGGAAACGAGCTTGAACTGGCTGTCAGCATGGGAATGGTGATTAATGACAGCAGTCACATGTATCACCTGGCTGTAGAAACTACTGGCAAGAAAATGGACACTTGTATCGCTCTACTCAAGTTATTACCCACCAGTGAGAACCACCTCATCAAGTCGTGTGCAAGATGCCAAGGAACTGTCACGGAAGTGAATGAATTACACGAGAAGGCAGGGTTACCAAGCGTGGAGGAATGTTTACAGAAAGCAGAGCAGTTTTATGAAGAGAGCAAATTCATGGATGCCATGAAGTATTACCTGGCTTCCTCGTCCCCTGAGCTAGCGCTTGACATTGGGCTCAATCTTGTACGAGACCGGTTACAGCAAAGCAGGACTTCCAAACAAAGACAGGAACTGCTGGCACTGAGTGCATACCTTGGAGCACTGTTAGCGATAAGGAGAAAATACACTCCTATCGTACATCCTCTCTTCAAACACGCCAGACAATTAATCCACCAGGACAAAGTGGAGTTGGTTGTTTCAGCCGCTCAAATCGACACCGAGTCCGAAGCATGGCTCGTCTTTAACCAACCTCTCAATCCCTCTGTCACTCCCACTCCTGAACAGAAGGCCGTTTGGGACTTAGTACTAAAGAGAGTTGGAACTGAGTCATCAATGTACGAGATGGGTGTTGACATGGTAACGGGCTCATTGCTCCCCAGTCACTCGGATGTTCAGCTGTCTTGTCTGACAGGAGAGCGAATCAGGGTCAGGCGTTTTTCTTGA

Transcript

OS493_027051-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZU2	WD repeat-containing protein 17 OS=Homo sapiens OX=9606 GN=WDR17 PE=1 SV=2
Q6BK34	Histone acetyltransferase type B subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=HAT2 PE=3 SV=1
Q4WEI5	Histone acetyltransferase type B subunit 2 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=hat2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004126 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44464 all species →	WD REPEAT-CONTAINING PROTEIN 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24740	WDR17; WD repeat-containing protein 17	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_027051-T1 global co-expression network