Gene detail

Detailed information of OS493_027153-T1 in Lophelia pertusa

Genomic Location: scaffold_145:437514...445189
NR annotation: KAJ7390117.1, N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KLE6	N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis OX=8355 GN=ntmt1-b PE=2 SV=1
Q4KL94	N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis OX=8355 GN=ntmt1-a PE=2 SV=1
Q6NWX7	N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio OX=7955 GN=ntmt1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05891 all species →	Methyltransf_PK	AdoMet dependent proline di-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR008576 all species →	Family	Alpha-N-methyltransferase NTM1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12753 all species →	AD-003 - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006480 all species →	Biological Process	N-terminal protein amino acid methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0071885 all species →	Molecular Function	N-terminal protein N-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16219	NTMT1, METTL11A, NTM1; protein N-terminal methyltransferase	EC:2.1.1.244	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027153-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

47.3Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.07	11.66
polyp at pH7 6	18	14	5.72	10.28
coral polyp · control treatment	16	16	10.48	39.76
coral polyp · oil and dispersant treatment	16	16	8.43	47.27
coral polyp · oil treatment	16	16	8.97	19.32
coral polyp · dispersant treatment	16	16	7.61	15.77
Polyp	10	8	4.35	12.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.