Gene detail

Detailed information of OS493_027187-T1 in Lophelia pertusa

Genomic Location: scaffold_146:25288...40821
NR annotation: KAJ7383524.1, hypothetical protein OS493_027187 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14032	Bile acid-CoA:amino acid N-acyltransferase OS=Homo sapiens OX=9606 GN=BAAT PE=1 SV=1
A2AKK5	Acyl-coenzyme A amino acid N-acyltransferase 1 OS=Mus musculus OX=10090 GN=Acnat1 PE=1 SV=1
Q8BGG9	Acyl-coenzyme A amino acid N-acyltransferase 2 OS=Mus musculus OX=10090 GN=Acnat2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08840 all species →	BAAT_C	BAAT / Acyl-CoA thioester hydrolase C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR014940 all species →	Domain	BAAT/Acyl-CoA thioester hydrolase C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10824 all species →	ACYL-COENZYME A THIOESTERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0006637 all species →	Biological Process	acyl-CoA metabolic process	Interproscan
GO:0047617 all species →	Molecular Function	fatty acyl-CoA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027187-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027187-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

12.8Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.16	6.75
polyp at pH7 6	18	18	3.94	6.87
coral polyp · control treatment	16	16	5.05	12.18
coral polyp · oil and dispersant treatment	16	16	3.81	12.81
coral polyp · oil treatment	16	16	4.18	10.54
coral polyp · dispersant treatment	16	16	3.71	7.13
Polyp	10	10	2.53	4.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.