Gene detail

Detailed information of OS493_027223-T1 in Lophelia pertusa

Genomic Location: scaffold_146:746584...769270
NR annotation: KAJ7383560.1, 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70266	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 OS=Mus musculus OX=10090 GN=Pfkfb1 PE=1 SV=2
P07953	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 OS=Rattus norvegicus OX=10116 GN=Pfkfb1 PE=1 SV=3
O35552	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 OS=Rattus norvegicus OX=10116 GN=Pfkfb3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001558 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01591 all species →	6PF2K	6-phosphofructo-2-kinase	Domain	Interproscan
PF00300 all species →	His_Phos_1	Histidine phosphatase superfamily (branch 1)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001345 all species →	Active_site	Phosphoglycerate/bisphosphoglycerate mutase, active site	Interproscan
IPR013079 all species →	Domain	6-phosphofructo-2-kinase	Interproscan
IPR013078 all species →	Family	Histidine phosphatase superfamily, clade-1	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR003094 all species →	Family	Fructose-2,6-bisphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10606 all species →	6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003873 all species →	Molecular Function	6-phosphofructo-2-kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006000 all species →	Biological Process	fructose metabolic process	Interproscan
GO:0004331 all species →	Molecular Function	fructose-2,6-bisphosphate 2-phosphatase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006003 all species →	Biological Process	fructose 2,6-bisphosphate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027223-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027223-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

78.9Max TPM

37.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.30	54.86
polyp at pH7 6	18	18	37.50	50.89
coral polyp · control treatment	16	16	42.93	61.31
coral polyp · oil and dispersant treatment	16	16	43.74	78.91
coral polyp · oil treatment	16	16	41.77	55.26
coral polyp · dispersant treatment	16	16	32.13	63.60
Polyp	10	10	27.32	54.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	54.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	44.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	43.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	32.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.