Gene detail

Detailed information of OS493_027224-T1 in Lophelia pertusa

Genomic Location: scaffold_146:772275...775203
NR annotation: KAJ7383561.1, hypothetical protein OS493_027224 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17QM8	Dual specificity protein phosphatase 14 OS=Bos taurus OX=9913 GN=DUSP14 PE=2 SV=1
O95147	Dual specificity protein phosphatase 14 OS=Homo sapiens OX=9606 GN=DUSP14 PE=1 SV=1
Q9JLY7	Dual specificity protein phosphatase 14 OS=Mus musculus OX=10090 GN=Dusp14 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008913 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR020420 all species →	Family	Atypical dual specificity phosphatase, subfamily B	Interproscan
IPR052103 all species →	Family	Dual Specificity Protein Phosphatases	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45961 all species →	IP21249P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0017017 all species →	Molecular Function	MAP kinase tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14165	K14165; atypical dual specificity phosphatase	EC:3.1.3.16 EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027224-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

42.8Max TPM

17.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.65	18.96
polyp at pH7 6	18	17	13.69	28.22
coral polyp · control treatment	16	16	24.92	36.17
coral polyp · oil and dispersant treatment	16	16	20.13	32.07
coral polyp · oil treatment	16	16	23.07	42.78
coral polyp · dispersant treatment	16	16	13.65	31.19
Polyp	10	10	16.30	25.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.