Gene detail

Detailed information of OS493_027290-T1 in Lophelia pertusa

Genomic Location: scaffold_148:679...3179
NR annotation: KAJ7371180.1, hypothetical protein OS493_027290 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001237 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_027290-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR038261 all species →	Homologous_superfamily	Golgi phosphoprotein 3-like domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_027290-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_027290-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027290-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027290-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

122.0Max TPM

26.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.35	31.08
polyp at pH7 6	18	18	18.93	50.88
coral polyp · control treatment	16	16	25.69	68.36
coral polyp · oil and dispersant treatment	16	16	30.42	63.00
coral polyp · oil treatment	16	16	22.72	40.13
coral polyp · dispersant treatment	16	16	50.71	122.02
Polyp	10	10	9.49	24.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	122.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.