Gene detail

Detailed information of OS493_027291-T1 in Lophelia pertusa

Genomic Location: scaffold_148:9764...32863
NR annotation: KAJ7371181.1, hypothetical protein OS493_027291 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04089 all species →	BRICHOS	BRICHOS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007084 all species →	Domain	BRICHOS domain	Interproscan
IPR001729 all species →	Family	Pulmonary surfactant-associated protein C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10800 all species →	PULMONARY SURFACTANT-ASSOCIATED PROTEIN C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007585 all species →	Biological Process	respiratory gaseous exchange by respiratory system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027291-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027291-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,905.1Max TPM

422.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	615.62	1,405.71
polyp at pH7 6	18	18	901.55	2,905.12
coral polyp · control treatment	16	16	261.78	571.75
coral polyp · oil and dispersant treatment	16	16	178.74	1,301.99
coral polyp · oil treatment	16	16	328.22	929.87
coral polyp · dispersant treatment	16	16	220.18	1,322.94
Polyp	10	10	333.74	1,821.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,405.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,384.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	969.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	969.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	866.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	852.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	688.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	629.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	544.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	482.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	367.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	361.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	355.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	350.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	234.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	230.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	198.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	189.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,905.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,867.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,383.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,325.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,257.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,249.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	717.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	677.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	472.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	458.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	192.41
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	191.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	136.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	571.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	514.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	466.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	458.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	443.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	442.82
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	319.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	282.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	161.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,301.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	479.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	274.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	929.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	831.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	554.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	498.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	470.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	308.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	289.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	286.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	195.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	169.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,322.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	737.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	389.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	182.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	173.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	157.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1,821.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	954.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	113.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	92.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	82.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	72.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	70.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	69.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	42.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.