Gene detail

Detailed information of OS493_027293-T1 in Lophelia pertusa

Genomic Location: scaffold_148:43699...53139
NR annotation: KAJ7371183.1, hypothetical protein OS493_027293 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04089 all species →	BRICHOS	BRICHOS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001729 all species →	Family	Pulmonary surfactant-associated protein C	Interproscan
IPR007084 all species →	Domain	BRICHOS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10800 all species →	PULMONARY SURFACTANT-ASSOCIATED PROTEIN C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007585 all species →	Biological Process	respiratory gaseous exchange by respiratory system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027293-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027293-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

137.8Max TPM

20.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.68	120.71
polyp at pH7 6	18	18	43.13	137.81
coral polyp · control treatment	16	16	15.15	67.02
coral polyp · oil and dispersant treatment	16	16	14.33	90.15
coral polyp · oil treatment	16	16	12.08	51.19
coral polyp · dispersant treatment	16	16	6.26	21.53
Polyp	10	9	14.65	42.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.12
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.47
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	42.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.