Gene detail

Detailed information of OS493_027294-T1 in Lophelia pertusa

Genomic Location: scaffold_148:62394...75836
NR annotation: KAJ7371184.1, hypothetical protein OS493_027294 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04089 all species →	BRICHOS	BRICHOS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007084 all species →	Domain	BRICHOS domain	Interproscan
IPR001729 all species →	Family	Pulmonary surfactant-associated protein C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10800 all species →	PULMONARY SURFACTANT-ASSOCIATED PROTEIN C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007585 all species →	Biological Process	respiratory gaseous exchange by respiratory system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027294-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027294-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

231.6Max TPM

19.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	14.70	45.59
polyp at pH7 6	18	12	11.35	51.73
coral polyp · control treatment	16	16	30.44	231.56
coral polyp · oil and dispersant treatment	16	14	22.32	131.47
coral polyp · oil treatment	16	16	27.08	167.46
coral polyp · dispersant treatment	16	14	8.65	42.37
Polyp	10	10	29.93	104.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	231.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	131.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	167.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	104.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	61.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	29.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.