Detailed information of OS493_027360-T1 in Lophelia pertusa

Genomic Location: scaffold_148:584544...587801
NR annotation: KAJ7371246.1, E3 ubiquitin-protein ligase herc2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O95714E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2
Q4U2R1E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3
Q9VR91Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN=HERC2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002667 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18346
all species →		SH3_15Mind bomb SH3 repeat domainDomainInterproscan
PF00569
all species →		ZZZinc finger, ZZ typeDomainInterproscan
PF11515
all species →		Cul7Mouse development and cellular proliferation protein Cullin-7FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040847
all species →		DomainMind bomb, SH3 repeat domainInterproscan
IPR014722
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR000433
all species →		DomainZinc finger, ZZ-typeInterproscan
IPR043145
all species →		Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR021097
all species →		DomainCPH domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20930
all species →		OVARIAN CARCINOMA ANTIGEN CA125-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_027360-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_027360-T1 global co-expression network
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