Gene detail

Detailed information of OS493_027407-T1 in Lophelia pertusa

Genomic Location: scaffold_149:374815...375537
NR annotation: KAJ7356011.1, hypothetical protein OS493_027407 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P85971	6-phosphogluconolactonase OS=Rattus norvegicus OX=10116 GN=Pgls PE=1 SV=1
O95336	6-phosphogluconolactonase OS=Homo sapiens OX=9606 GN=PGLS PE=1 SV=2
Q2TBQ8	6-phosphogluconolactonase OS=Bos taurus OX=9913 GN=PGLS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01182 all species →	Glucosamine_iso	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005900 all species →	Domain	6-phosphogluconolactonase, DevB-type	Interproscan
IPR039104 all species →	Family	6-Phosphogluconolactonase	Interproscan
IPR006148 all species →	Domain	Glucosamine/galactosamine-6-phosphate isomerase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11054 all species →	6-PHOSPHOGLUCONOLACTONASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan
GO:0017057 all species →	Molecular Function	6-phosphogluconolactonase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01057	PGLS, pgl, devB; 6-phosphogluconolactonase	EC:3.1.1.31	Pentose phosphate pathway	ko00030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027407-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

13.8Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.42	10.24
polyp at pH7 6	18	18	6.31	11.78
coral polyp · control treatment	16	16	5.31	13.78
coral polyp · oil and dispersant treatment	16	15	2.62	8.48
coral polyp · oil treatment	16	16	5.46	13.07
coral polyp · dispersant treatment	16	16	4.95	13.30
Polyp	10	10	5.54	12.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.