Gene detail

Detailed information of OS493_027460-T1 in Lophelia pertusa

Genomic Location: scaffold_150:120489...144945
NR annotation: KAJ7326516.1, beta transducin [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_027460-T1

ATGGCAGAGCCTCCTGAATCTTCCTTGCCGCCTCCAGTGCTTGAAAAACTGCGAGAGTTGAACGCCGAGCTTGCCGAAGGGGACATCACTCAGAAGGGATATGAAAAGAAAAGGGCCAAACTGCTTGGTCCTTACCTGTCAAGAGATTCAAATGTTGCCTCACCTAACAGTCCGAACATGAATGATCATTATAGTGCTGTTCAAAGGTCAGAGGCCCTACAGGCAGCCTTGGCAAAAAGACTCAATGCACAAGACCCTGACATGCCTGCACCATTCAAAAGACAGTCACTTATGAAACGTAAACCTGTTGAGAATGGTACACAGCCACAGCTACATGGAGGGTCTGTCTCCTCACAAGACTCAATAGGAAACGTGCCTCCAAGTGACTACACACCACCTGGTTCACTTAGTTCACATACCTCCATTCATCGAACAGGCTCTGAGGAATTCCCCGCCCCTCCCTCTGAAGTGTTTTTCCAACATAGGCATAGCTCTGGCAGTTTCCCCCCGGTCACCCCTCCCCCAGACTTGACAAGACAATCTCCGGCAGATAAGTTTACTGATACCAAAGGAAGTCGAGTGATGCATCTGTCGTCAGTGCGGACAATTGAGGAAGATGACGGACAAGAATCAGTGGCAAGCAGTCGAGTATCAAGCAAAATTCAACAACTTCTCAACACACTGAAGAGACCCAAAAGAAAACCCTTAGAACAGTTTTACACAGAGGATGATGATGAACTTGTCGAAGCAACTAAACCTGATCCAAATGCTCCGCGGCCAGAAGGGCAAACACTAAGACCTGTCACTGGTGAATCCTTAGAGGTCGCAGAGGAGCTGCCCAAAAATTTAGAGGAATCCGTGAGCAAGTTTGCTTCAAAATCACCAAAGGTCTCCTGCTTCTCTGTTGTGGACAGTCATGGCAAAAGTAATGTCACTCTTACATATGGTAAACTTCTGTCCAGATCAATGAAGCTGGCATATGCTTTACTAAACAAGGTCGGCAGCCATAAAGAGGGAACATCAATCATGACTGGAGACAGGGTTGCCTTGGTGTATCAAGTTGATGATCCTATCAATTTTATAACAAGTTTTTATGGTTGTCTTATTGCTGGAATCATACCGGTTCCTATAGAACCACCTGCAAGTAAAGATTACCCCGGCTGTCAGCAAATTGGCTTTCTCCTTGGTAGTTGTGGAGTATCCTGGGCCCTTACATCTGAAACATGTCTAAAAAGCTTACCCAAGGATGATACAGGACATGTCAGTACATTTAAAGGTTGGCCCAAACTGCAATGGTTTGTCACAGCAAATCTCAACAGACATCCAAAAGATTGGCAACCACCGTCAAATCTGGACAGAAGTTCACCCGCTTATATTGAGTCCACAGTAGGTAAGGACGGTGCAGTAATGGGCGTCACGGTAACACGGATGAGTATGAACCTTCATACCCAGGTCCTGAGTCAAGCGTGTTCTTACACTGAAGGTGAAATAATGATCAGCGTTCTTGATCCAAAGAGGGAAGTAGGATTGTGGCATTCTGTTTTAACAAATGTGATGAATGGAATGCATGTTATTTACGTACCACCATCAGTTTTAAAGAATTCGCCAGCCATGTGGCTGCAGATGGTAACAAAACACAGAGCTACTTGTGCACTGGTGAGTTCCAGAGATCTCCACTGGTCGCTGCATGCCAGCAAAGATGTTAAAGATATCAACCTTGGTACCATTAGAATGTTATTACTGGCTGACCGAGCTAATCCATGGTCTTTGTCAGCCTGTGACTCTTTTCTAAATGCATTTGAGGCTAAAGGCTTAAAACCCGAGGCTCTTTGTCCTTGTGCAAGTTCAACAGAAACAATGACGGTTGGCTTAAGAAGACCAGGCAAGCCAGGAACAACTGCCACTGGCCGTGGAGTGCTGTCGTTATCTGGTCTGAGTCATGGAGTGGTGCGAGTTGACAAGGAAGGATCTCTAACGTCACTGACCCTGCAGGATTGTGGGACAGTGTTACCAGGAGCCAAGATAGCAGTGGTAAAGCTTGAAGGTTCTCCATACTTGTGTAAGAGCGATGAGGTTGGTGAGCTGTGCATATCAAGTGGAGCCACAGGGAGTGCATACTGGGGACTAGCTGGAAAAACTAATCACACATTCAAGGTTCAACCTACTTTAGATGACGGAGCACCATTTGAACAGTATCCACTCAGTGACTTTGTTAGAACTGGATTGCTTGGATTCTTAGGACCAGGTGGATTAGTTTTTGTGTGCGGCACAGCTGATGGTATAATCAAAGTCAGTGGAAGAAGACACAACTGTGATGACCTGAAGGCCACAATCCTAGCTGTTGATCCAATTAAATTTGTCTATAGAGGCAGGATTGCTATATTCTCCATAACTGTTCTCAAGGATGACAGAATCGTAGTTGTAGCTGAGCAAAGACCACAGTGTACAGAAGAGGAGAGCTTCCAATGGATGAGTCATGTGTTACCTGCAGTTGACAGTATTCATAATGTCGGTATTTATTGCTTATGTCTTGTCGCACCTGGTGGATTACCAAAGACAAGTAGTGGAGCTGTACATATTCACGAGACAAGACAGAAGTTCATGGAAGGTTCACTGCACCCAGCTAACATTCTGATGTGTCCTCACACGTGTGTGACAAACCTTCCTCAACCAAGACAAAAACACCCAGAGCCTGGTCCTGCTGCTACAATGGTTGGTAACATTGTTATGGGGACAAGGATAGGAGGTGCTGCTGGGAGAGAGATAGCAGACATAGAGGAGGACAGTGATATGACAAGAAAGTATCAATTTCTGGCAGAGATTCTCAAGTGGAGAGCACAAACGATGCCTGATCACACGCTATTTACATTACTGAACGCCAAGATGGCTGTGGAACAAGGTCGCCTCAGCTCTGGTGACAATGTAGCGCTTCTCTTCACTCCTGGTGTGGACTTCATAGTAGCAGTTTTTGCATGTCTTTATGCTGGTCTCATCCCAGTCCCCGTCCGTCCCCCTCACGCCAACAACATCAGCTCCACCCTCCCCACCGTCAAAATGGTTATTGACGTCAGCAAGTCACGTGCAGTGCTAACCACTCACAACATCGCCAAGGCCTTGAGGTCCAAAGAAGCTGTTGGAGTGGTGGACATAAAGTCATGGCCCACAATGGTGGAGGTGGATGATGCTCCTAAGAAGAAATTGACGAATCCGTACAGAGCTCCTACACCGGAGATGATCGCTTATCTTGATTTTAGTGTTTCTACAACTGGAATGCTGTCTGGAGTAAAGATGTCTCACTCAGCAGTAACTGCTCTCTGTCGAGCCATGAAGCTCGCATGTGAGCTCTATCCTTCTCGTGATATCGCTGTTTGTCTTGATCCATATTGTGGATTAGGATTTCTACTTTGGTGTTTAACAGGGGTCTATTCTGGACATCACACAATCCTCATCCCCCCGGGAGATCTGGAGACTAATCCAGCTCTTTGGTTATCAGTAGTTAGTCAGTATAAAGTCCGTGACACGTTCTGTTCTTACCCTGTGATGGATTTATGTACCAAGGGACTGGGACAGTCAATACCGGCACTCAAGTCCAAGGGCGTCAACTTAACTTGTGTTCGAAACTGTGTGGTAGTAGCTGAAGAGCGTCCCAGAATAAACCTGACAATGGCGTTTTCTACTCTTTTCTCTGGCCTGGGCCTCTCCTCTCGTGCAGTCAGTACTTCATTTGGATGCAGAGCCAATGTTGCCATTTGCACGCAGGGTGCGTCAACCCCCGAGGCCTCTAGTGTGTACGTGGACACAAGAGCCTTGCGAAATGACAGAGTGACTCTTGTGGAGCGAGGAAGTCCGCACAGTTTATGTCTCTTGGAATCCGGCAAGATCTTACCCGGTGTCAAAGTGGTCATCGCTAATCCAGAAACAAAAGGCATGTGCGCAGACTCACATCTAGGAGAGATCTGGGCCAATAGCCCGCACAGTGGCAGCGGTTATTTCATGACAGGCGAGGATACCCAGACTGATGACCGTTTCAACGCTAAATTGACCACTGGGGGTCTGGGAGAGACTGGGGTACAGTACGCCCGAACGGGGTACCTGGGATTCATTAAAAGAACAGATTTCACGCAGACTGATGGAGCTCGGCATGACGCGTTGTTTGTGGTTGGCCCGCTAGACGAGACCATGATACTACGTGGTATGCGGTATCACCCAGTAGATATCGAGAACACCGTCACAAGATGCCACCGAGCAATCTGCGAGAGTGCGGTCTTCACGTGGACGAACCTCCTTGTGGTAGTGGTCGAACTTGATGCGGAAGAAAGCGAAGCACTTGACGTTGTTCCGCTTGTGACGTCATCCGTGTTGAACGAACAACAACTGATTGTGGGTGTGGTAGTGGTGGTCGACCCAGGCGTGGTACCGATAAATTCGCGTGGGGAGAAGCAACGAATGCATTTGAGAGACGGGTTCCTCGGGGATCAATTGGACCCTATTTACGTGGCGTACAATATGTAG

Transcript

OS493_027460-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P265	Disco-interacting protein 2 homolog B OS=Homo sapiens OX=9606 GN=DIP2B PE=1 SV=3
Q9Y2E4	Disco-interacting protein 2 homolog C OS=Homo sapiens OX=9606 GN=DIP2C PE=1 SV=2
Q3UH60	Disco-interacting protein 2 homolog B OS=Mus musculus OX=10090 GN=Dip2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002951 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06464 all species →	DMAP_binding	DMAP1-binding Domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037337 all species →	Domain	Dip2-like domain	Interproscan
IPR010506 all species →	Domain	DMAP1-binding domain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22754 all species →	DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_027460-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24909	DIP2C; disco-interacting protein 2 homolog C	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_027460-T1 global co-expression network