Gene detail

Detailed information of OS493_027483-T1 in Lophelia pertusa

Genomic Location: scaffold_150:462912...468484
NR annotation: KAJ7326537.1, 40S ribosomal protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P02362	Small ribosomal subunit protein eS7 OS=Xenopus laevis OX=8355 GN=rps7 PE=1 SV=2
A6H769	Small ribosomal subunit protein eS7 OS=Bos taurus OX=9913 GN=RPS7 PE=1 SV=1
Q5RT64	Small ribosomal subunit protein eS7 OS=Felis catus OX=9685 GN=RPS7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007842 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01251 all species →	Ribosomal_S7e	Ribosomal protein S7e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047861 all species →	Conserved_site	Small ribosomal subunit protein eS7, conserved site	Interproscan
IPR000554 all species →	Family	Small ribosomal subunit protein eS7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11278 all species →	40S RIBOSOMAL PROTEIN S7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02993	RP-S7e, RPS7; small subunit ribosomal protein S7e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027483-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

7,636.5Max TPM

4,370.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5,794.93	7,258.36
polyp at pH7 6	18	18	5,517.77	6,856.11
coral polyp · control treatment	16	16	3,507.65	5,090.13
coral polyp · oil and dispersant treatment	16	16	3,224.12	5,462.16
coral polyp · oil treatment	16	16	4,012.40	6,268.51
coral polyp · dispersant treatment	16	16	2,872.41	6,366.76
Polyp	10	10	5,920.96	7,636.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7,258.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7,255.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,547.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,546.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,471.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,429.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,326.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,307.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,272.30
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6,262.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,254.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,251.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,093.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5,060.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,744.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,724.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,256.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,247.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,856.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,791.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,264.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,241.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,062.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6,034.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,711.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,671.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,378.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,280.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,105.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,085.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5,027.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,968.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,901.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,814.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,563.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,562.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,090.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,808.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,665.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,274.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,026.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,968.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,820.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,397.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,206.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,111.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,956.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,824.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,813.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,611.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,443.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,102.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5,462.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,356.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,763.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,419.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,288.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,255.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,186.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,122.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,002.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,955.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,772.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,763.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,702.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,600.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,564.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,370.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,268.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,216.57
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,748.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,596.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,172.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,089.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,946.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,772.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,744.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,722.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,559.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,552.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,461.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,391.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,131.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,822.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6,366.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6,015.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3,025.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,988.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,850.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,627.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,422.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,361.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,360.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,342.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,291.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,288.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,275.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,989.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,974.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,777.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7,636.55
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7,141.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6,426.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6,420.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5,875.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5,713.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5,429.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5,070.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4,822.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4,673.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.