Gene detail

Detailed information of OS493_027485-T1 in Lophelia pertusa

Genomic Location: scaffold_150:485824...487725
NR annotation: KAJ7326539.1, actin binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LYM3	Protein spire homolog 1 OS=Danio rerio OX=7955 GN=spire1 PE=2 SV=1
Q08AE8	Protein spire homolog 1 OS=Homo sapiens OX=9606 GN=SPIRE1 PE=1 SV=3
Q5U3H9	Protein spire homolog 2 OS=Danio rerio OX=7955 GN=spire2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009142 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16474 all species →	KIND	Kinase non-catalytic C-lobe domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011019 all species →	Domain	KIND domain	Interproscan
IPR029901 all species →	Family	Protein Spire	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21345 all species →	SPIRE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0030659 all species →	Cellular Component	cytoplasmic vesicle membrane	Interproscan
GO:0036089 all species →	Biological Process	cleavage furrow formation	Interproscan
GO:0040038 all species →	Biological Process	polar body extrusion after meiotic divisions	Interproscan
GO:0045010 all species →	Biological Process	actin nucleation	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:0051295 all species →	Biological Process	establishment of meiotic spindle localization	Interproscan
GO:0051639 all species →	Biological Process	actin filament network formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02098	SPIR; spire	-	Dorso-ventral axis formation	ko04320	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027485-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

9.5Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.45	3.86
polyp at pH7 6	18	18	2.03	3.65
coral polyp · control treatment	16	16	3.24	6.63
coral polyp · oil and dispersant treatment	16	15	3.39	6.17
coral polyp · oil treatment	16	16	2.48	4.20
coral polyp · dispersant treatment	16	16	4.87	9.46
Polyp	10	10	2.26	4.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.