Gene detail

Detailed information of OS493_027522-T1 in Lophelia pertusa

Genomic Location: scaffold_150:760205...762697
NR annotation: KAJ7326568.1, Putative N-acetylglucosamine-6-phosphate deacetylase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011728 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11113 all species →	N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0006046 all species →	Biological Process	N-acetylglucosamine catabolic process	Interproscan
GO:0008448 all species →	Molecular Function	N-acetylglucosamine-6-phosphate deacetylase activity	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027522-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027522-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

23.6Max TPM

5.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.35	9.14
polyp at pH7 6	18	16	5.22	9.84
coral polyp · control treatment	16	16	5.51	17.82
coral polyp · oil and dispersant treatment	16	16	4.12	23.55
coral polyp · oil treatment	16	16	5.63	11.09
coral polyp · dispersant treatment	16	16	3.37	10.86
Polyp	10	7	5.31	18.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.