Gene detail

Detailed information of OS493_027523-T1 in Lophelia pertusa

Genomic Location: scaffold_150:811297...816230
NR annotation: KAJ7326569.1, hypothetical protein OS493_027523 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29554	Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa OX=9823 GN=HADHA PE=2 SV=1
P40939	Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=HADHA PE=1 SV=2
Q8BMS1	Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Hadha PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003582 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050136 all species →	Family	Fatty acid oxidation complex subunit alpha	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612 all species →	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016507 all species →	Cellular Component	mitochondrial fatty acid beta-oxidation multienzyme complex	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027523-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027523-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

392.1Max TPM

92.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	91.06	138.05
polyp at pH7 6	18	18	111.89	175.12
coral polyp · control treatment	16	16	98.83	348.38
coral polyp · oil and dispersant treatment	16	16	81.92	392.09
coral polyp · oil treatment	16	16	86.99	109.22
coral polyp · dispersant treatment	16	16	61.04	105.71
Polyp	10	10	129.70	195.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	138.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	114.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	175.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	158.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	148.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	132.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	126.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	124.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	348.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.15
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	392.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	195.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	161.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	150.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	147.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	136.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	114.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	112.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	100.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	89.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	88.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.