Gene detail

Detailed information of OS493_027530-T1 in Lophelia pertusa

Genomic Location: scaffold_150:897514...905364
NR annotation: KAJ7326576.1, O(6)-methylguanine-induced apoptosis 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3KQ80	O(6)-methylguanine-induced apoptosis 2 OS=Xenopus laevis OX=8355 GN=stpg1 PE=2 SV=1
A5WUY6	O(6)-methylguanine-induced apoptosis 2 OS=Danio rerio OX=7955 GN=stpg1 PE=2 SV=1
A6QQ60	O(6)-methylguanine-induced apoptosis 2 OS=Bos taurus OX=9913 GN=STPG1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006167 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07004 all species →	SHIPPO-rpt	Sperm-tail PG-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010736 all species →	Repeat	Sperm-tail PG-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35678 all species →	PROTEIN STPG4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001939 all species →	Cellular Component	female pronucleus	Interproscan
GO:0001940 all species →	Cellular Component	male pronucleus	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0042585 all species →	Cellular Component	germinal vesicle	Interproscan
GO:0044727 all species →	Biological Process	epigenetic programing of male pronucleus	Interproscan
GO:1901537 all species →	Biological Process	obsolete positive regulation of DNA demethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027530-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027530-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

35.6Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	10.61	31.12
polyp at pH7 6	18	18	7.90	25.61
coral polyp · control treatment	16	16	8.55	25.50
coral polyp · oil and dispersant treatment	16	16	7.80	35.56
coral polyp · oil treatment	16	16	7.08	14.47
coral polyp · dispersant treatment	16	16	5.27	10.77
Polyp	10	9	8.56	28.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.80
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	28.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.