Gene detail

Detailed information of OS493_027531-T1 in Lophelia pertusa

Genomic Location: scaffold_150:908258...908986
NR annotation: KAJ7326577.1, hypothetical protein OS493_027531 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010827 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14927 all species →	Neurensin	Neurensin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024883 all species →	Family	Neurensin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14796 all species →	NEURENSIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030133 all species →	Cellular Component	transport vesicle	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027531-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027531-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.1Max TPM

14.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.56	25.98
polyp at pH7 6	18	18	18.51	28.45
coral polyp · control treatment	16	16	14.26	24.08
coral polyp · oil and dispersant treatment	16	16	9.57	16.18
coral polyp · oil treatment	16	16	13.64	19.54
coral polyp · dispersant treatment	16	16	7.06	12.60
Polyp	10	10	16.37	32.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.