Gene detail

Detailed information of OS493_027543-T1 in Lophelia pertusa

Genomic Location: scaffold_151:64388...66253
NR annotation: KAJ7390019.1, hypothetical protein OS493_027543 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23610	40-kDa huntingtin-associated protein OS=Homo sapiens OX=9606 GN=F8A1 PE=1 SV=2
M0RDU0	40-kDa huntingtin-associated protein OS=Rattus norvegicus OX=10116 GN=F8a1 PE=1 SV=1
Q00558	40-kDa huntingtin-associated protein OS=Mus musculus OX=10090 GN=F8a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008725 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039494 all species →	Family	Factor VIII intron 22 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16797 all species →	FACTOR VIII-ASSOCIATED GENE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0099518 all species →	Biological Process	vesicle cytoskeletal trafficking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20135	F8A; factor VIII intron 22 protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027543-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

30.8Max TPM

9.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.12	11.93
polyp at pH7 6	18	18	8.08	15.03
coral polyp · control treatment	16	16	13.03	30.82
coral polyp · oil and dispersant treatment	16	16	8.74	13.64
coral polyp · oil treatment	16	16	12.90	24.48
coral polyp · dispersant treatment	16	16	4.80	11.87
Polyp	10	10	8.01	16.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.