Gene detail

Detailed information of OS493_027611-T1 in Lophelia pertusa

Genomic Location: scaffold_152:103155...105621
NR annotation: KAJ7383452.1, Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJ15	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Mus musculus OX=10090 GN=Man1b1 PE=1 SV=1
B2GUY0	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Rattus norvegicus OX=10116 GN=Man1b1 PE=2 SV=2
Q9UKM7	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens OX=9606 GN=MAN1B1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001849 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR050749 all species →	Family	Glycosyl Hydrolase Family 47	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11742 all species →	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027611-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027611-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

19.6Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.32	10.32
polyp at pH7 6	18	18	6.46	10.57
coral polyp · control treatment	16	16	10.24	19.61
coral polyp · oil and dispersant treatment	16	16	9.85	16.53
coral polyp · oil treatment	16	16	8.67	13.25
coral polyp · dispersant treatment	16	15	4.81	7.54
Polyp	10	9	4.57	8.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.