Gene detail

Detailed information of OS493_027613-T1 in Lophelia pertusa

Genomic Location: scaffold_152:106883...109415
NR annotation: KAJ7383453.1, Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJ15	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Mus musculus OX=10090 GN=Man1b1 PE=1 SV=1
B2GUY0	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Rattus norvegicus OX=10116 GN=Man1b1 PE=2 SV=2
Q9UKM7	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens OX=9606 GN=MAN1B1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001783 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050749 all species →	Family	Glycosyl Hydrolase Family 47	Interproscan
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11742 all species →	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23741	MAN1B, MNS3; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidase	EC:3.2.1.209	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027613-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.5Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.56	6.92
polyp at pH7 6	18	17	3.99	7.12
coral polyp · control treatment	16	16	6.73	14.75
coral polyp · oil and dispersant treatment	16	16	6.75	20.55
coral polyp · oil treatment	16	16	5.36	12.09
coral polyp · dispersant treatment	16	15	3.86	7.25
Polyp	10	9	1.80	2.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.