Gene detail

Detailed information of OS493_027632-T1 in Lophelia pertusa

Genomic Location: scaffold_152:274993...275529
NR annotation: KAJ7383471.1, hypothetical protein OS493_027632 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SY73	NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana OX=3702 GN=At1g10310 PE=1 SV=1
Q9X248	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=fabG PE=3 SV=1
P66778	Probable oxidoreductase EphD OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ephD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004539 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR053241 all species →	Family	NADPH-dependent pterin aldehyde reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45267 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027632-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027632-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

82TPM > 0

7Conditions

14.0Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	1.95	6.38
polyp at pH7 6	18	12	1.24	5.77
coral polyp · control treatment	16	13	2.02	12.58
coral polyp · oil and dispersant treatment	16	10	1.23	13.99
coral polyp · oil treatment	16	12	1.54	10.34
coral polyp · dispersant treatment	16	13	3.07	10.20
Polyp	10	9	0.97	4.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.01
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.