Gene detail

Detailed information of OS493_027636-T1 in Lophelia pertusa

Genomic Location: scaffold_152:309360...320609
NR annotation: KAJ7383475.1, hypothetical protein OS493_027636 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005964 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03283 all species →	PAE	Pectinacetylesterase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004963 all species →	Family	Pectinacetylesterase/NOTUM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21562 all species →	NOTUM-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19882	NOTUM; O-palmitoleoyl-L-serine hydrolase	EC:3.1.1.98	Wnt signaling pathway	ko04310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027636-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.6Max TPM

24.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.59	38.14
polyp at pH7 6	18	18	23.90	31.96
coral polyp · control treatment	16	16	29.12	41.30
coral polyp · oil and dispersant treatment	16	16	21.81	35.11
coral polyp · oil treatment	16	16	24.65	34.77
coral polyp · dispersant treatment	16	16	22.50	43.56
Polyp	10	10	20.22	38.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.17
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.55
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.55

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.