Gene detail

Detailed information of OS493_027674-T1 in Lophelia pertusa

Genomic Location: scaffold_152:690019...700368
NR annotation: KAJ7383508.1, hypothetical protein OS493_027674 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus OX=10090 GN=Hgsnat PE=1 SV=2
Q68CP4	Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens OX=9606 GN=HGSNAT PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001838 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07786 all species →	HGSNAT_cat	Heparan-alpha-glucosaminide N-acetyltransferase, catalytic	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012429 all species →	Domain	Heparan-alpha-glucosaminide N-acetyltransferase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31061 all species →	LD22376P	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_027674-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027674-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027674-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

29.1Max TPM

14.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.04	22.23
polyp at pH7 6	18	17	14.98	26.93
coral polyp · control treatment	16	16	17.23	29.13
coral polyp · oil and dispersant treatment	16	16	12.78	18.08
coral polyp · oil treatment	16	16	15.28	20.25
coral polyp · dispersant treatment	16	16	11.85	19.23
Polyp	10	9	9.97	20.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.80
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.