Gene detail

Detailed information of OS493_027727-T1 in Lophelia pertusa

Genomic Location: scaffold_153:350859...360936
NR annotation: KAJ7377649.1, Forkhead box protein P4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5W1J5	Forkhead box protein P1 OS=Xenopus laevis OX=8355 GN=foxp1 PE=1 SV=1
Q58NQ4	Forkhead box protein P1 OS=Gallus gallus OX=9031 GN=FOXP1 PE=2 SV=1
A4IFD2	Forkhead box protein P1 OS=Bos taurus OX=9913 GN=FOXP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002206 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan
PF16159 all species →	FOXP-CC	FOXP coiled-coil domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR050998 all species →	Family	Forkhead box protein P	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR047412 all species →	Domain	Forkhead box protein P1/P2, forkhead domain	Interproscan
IPR032354 all species →	Domain	FOXP, coiled-coil domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45796 all species →	FORKHEAD BOX P, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027727-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027727-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

63.4Max TPM

29.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.31	44.22
polyp at pH7 6	18	18	23.70	42.26
coral polyp · control treatment	16	16	37.77	57.47
coral polyp · oil and dispersant treatment	16	16	26.09	36.50
coral polyp · oil treatment	16	16	36.36	63.44
coral polyp · dispersant treatment	16	16	23.02	59.99
Polyp	10	10	32.36	60.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	60.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	34.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.