Gene detail

Detailed information of OS493_027731-T1 in Lophelia pertusa

Genomic Location: scaffold_153:397247...402072
NR annotation: KAJ7377653.1, hypothetical protein OS493_027731 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UDR5	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens OX=9606 GN=AASS PE=1 SV=1
A2VCW9	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Aass PE=2 SV=1
A8E657	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Bos taurus OX=9913 GN=AASS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003890 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16653 all species →	Sacchrp_dh_C	Saccharopine dehydrogenase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051168 all species →	Family	Alpha-aminoadipic semialdehyde synthase	Interproscan
IPR032095 all species →	Domain	Saccharopine dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11133 all species →	SACCHAROPINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004753 all species →	Molecular Function	saccharopine dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019878 all species →	Biological Process	lysine biosynthetic process via aminoadipic acid	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027731-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027731-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

158.7Max TPM

35.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.20	14.77
polyp at pH7 6	18	17	8.33	13.05
coral polyp · control treatment	16	16	44.34	158.67
coral polyp · oil and dispersant treatment	16	16	86.03	143.54
coral polyp · oil treatment	16	16	36.27	67.96
coral polyp · dispersant treatment	16	16	51.26	118.80
Polyp	10	10	9.86	23.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.72
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	158.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.