Gene detail

Detailed information of OS493_027778-T1 in Lophelia pertusa

Genomic Location: scaffold_154:125962...142552
NR annotation: KAJ7371090.1, Indoleamine 2,3-dioxygenase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZQW0	Indoleamine 2,3-dioxygenase 2 OS=Homo sapiens OX=9606 GN=IDO2 PE=1 SV=5
P14902	Indoleamine 2,3-dioxygenase 1 OS=Homo sapiens OX=9606 GN=IDO1 PE=1 SV=1
F1LV46	Indoleamine 2,3-dioxygenase 2 OS=Rattus norvegicus OX=10116 GN=Ido2 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01231 all species →	IDO	Indoleamine 2,3-dioxygenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037217 all species →	Homologous_superfamily	Tryptophan/Indoleamine 2,3-dioxygenase-like	Interproscan
IPR000898 all species →	Family	Indoleamine 2,3-dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28657 all species →	INDOLEAMINE 2,3-DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019441 all species →	Biological Process	tryptophan catabolic process to kynurenine	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004833 all species →	Molecular Function	tryptophan 2,3-dioxygenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0033754 all species →	Molecular Function	indoleamine 2,3-dioxygenase activity	Interproscan
GO:0034354 all species →	Biological Process	'de novo' NAD biosynthetic process from tryptophan	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00463	IDO, INDO; indoleamine 2,3-dioxygenase	EC:1.13.11.52	African trypanosomiasis	ko05143	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027778-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

62TPM > 0

7Conditions

18.6Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	0	0.00	0.00
polyp at pH7 6	18	5	0.26	1.47
coral polyp · control treatment	16	13	2.81	18.59
coral polyp · oil and dispersant treatment	16	15	2.63	11.38
coral polyp · oil treatment	16	12	1.28	3.63
coral polyp · dispersant treatment	16	14	1.95	10.76
Polyp	10	3	0.15	1.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.