Gene detail

Detailed information of OS493_027812-T1 in Lophelia pertusa

Genomic Location: scaffold_154:385883...395605
NR annotation: KAJ7371124.1, ArfGAP with dual PH [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75689	Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ADAP1 PE=1 SV=2
Q9JK15	Arf-GAP with dual PH domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Adap2 PE=1 SV=1
Q9NPF8	Arf-GAP with dual PH domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ADAP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR037849 all species →	Domain	ADAP, PH domain 1	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR052589 all species →	Family	Arf-GAP with dual PH domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46021 all species →	ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:1902936 all species →	Molecular Function	phosphatidylinositol bisphosphate binding	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23781	ADAP, CENTA; Arf-GAP with dual PH domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027812-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

54.7Max TPM

19.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.28	15.17
polyp at pH7 6	18	18	11.35	20.85
coral polyp · control treatment	16	16	30.21	44.24
coral polyp · oil and dispersant treatment	16	16	23.65	37.90
coral polyp · oil treatment	16	16	25.70	54.66
coral polyp · dispersant treatment	16	16	20.76	32.87
Polyp	10	10	8.67	16.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.22
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.