Gene detail

Detailed information of OS493_027825-T1 in Lophelia pertusa

Genomic Location: scaffold_154:497356...499722
NR annotation: KAJ7371137.1, hypothetical protein OS493_027825 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002930 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21007 all species →	FBF1	Fas-binding factor 1	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033561 all species →	Family	Fas-binding factor 1	Interproscan
IPR049390 all species →	Domain	Fas-binding factor 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33689 all species →	FAS-BINDING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0090162 all species →	Biological Process	establishment of epithelial cell polarity	Interproscan
GO:0097539 all species →	Cellular Component	ciliary transition fiber	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027825-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027825-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

31.0Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.78	10.21
polyp at pH7 6	18	18	4.79	7.59
coral polyp · control treatment	16	16	8.57	21.06
coral polyp · oil and dispersant treatment	16	16	6.33	31.02
coral polyp · oil treatment	16	16	6.43	12.07
coral polyp · dispersant treatment	16	15	4.77	15.02
Polyp	10	9	1.80	3.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.