Gene detail

Detailed information of OS493_027839-T1 in Lophelia pertusa

Genomic Location: scaffold_154:617842...625338
NR annotation: KAJ7371150.1, hypothetical protein OS493_027839 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR045319 all species →	Family	Potassium channel KAT/AKT	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45743 all species →	POTASSIUM CHANNEL AKT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027839-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027839-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

88TPM > 0

7Conditions

13.0Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	2.07	6.23
polyp at pH7 6	18	10	1.73	4.76
coral polyp · control treatment	16	15	4.29	10.88
coral polyp · oil and dispersant treatment	16	14	2.65	9.04
coral polyp · oil treatment	16	15	4.90	13.00
coral polyp · dispersant treatment	16	14	2.49	7.16
Polyp	10	7	1.50	4.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.