Gene detail

Detailed information of OS493_027841-T1 in Lophelia pertusa

Genomic Location: scaffold_154:630938...635240
NR annotation: KAJ7371152.1, hypothetical protein OS493_027841 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BLG4	Ammonium transporter 1 OS=Dictyostelium discoideum OX=44689 GN=amtA PE=1 SV=1
O66515	Ammonium transporter OS=Aquifex aeolicus (strain VF5) OX=224324 GN=amt PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan
IPR001905 all species →	Family	Ammonium transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43029 all species →	AMMONIUM TRANSPORTER MEP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027841-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027841-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

6.7Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.89	6.21
polyp at pH7 6	18	13	1.75	5.04
coral polyp · control treatment	16	15	1.81	4.76
coral polyp · oil and dispersant treatment	16	12	1.04	5.02
coral polyp · oil treatment	16	15	2.09	6.73
coral polyp · dispersant treatment	16	14	1.35	4.06
Polyp	10	7	0.82	2.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.