Gene detail

Detailed information of OS493_027846-T1 in Lophelia pertusa

Genomic Location: scaffold_154:669156...671803
NR annotation: KAJ7371157.1, hypothetical protein OS493_027846 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DK93	Cornifelin homolog OS=Xenopus tropicalis OX=8364 GN=cnfn PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000625 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15907 all species →	DUF614 FAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_027846-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027846-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027846-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

278.4Max TPM

107.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	132.56	168.34
polyp at pH7 6	18	18	117.24	157.54
coral polyp · control treatment	16	16	92.05	148.32
coral polyp · oil and dispersant treatment	16	16	62.07	113.93
coral polyp · oil treatment	16	16	120.52	256.50
coral polyp · dispersant treatment	16	16	59.15	225.88
Polyp	10	10	195.17	278.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	159.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	158.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	157.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	152.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	151.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	132.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	153.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	143.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	116.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	114.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	129.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.73
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	256.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	194.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	154.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	129.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	225.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	278.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	273.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	231.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	213.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	209.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	169.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	152.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	145.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	140.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	138.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.