Gene detail

Detailed information of OS493_027922-T1 in Lophelia pertusa

Genomic Location: scaffold_155:717937...718734
NR annotation: KAJ7355133.1, hypothetical protein OS493_027922 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002659 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01234 all species →	NNMT_PNMT_TEMT	NNMT/PNMT/TEMT family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000940 all species →	Family	Methyltransferase, NNMT/PNMT/TEMT	Interproscan
IPR053384 all species →	Family	SAM-dependent methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10867 all species →	NNMT/PNMT/TEMT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008170 all species →	Molecular Function	N-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027922-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027922-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

16.6Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.73	9.01
polyp at pH7 6	18	18	3.92	7.13
coral polyp · control treatment	16	16	4.11	10.06
coral polyp · oil and dispersant treatment	16	15	2.42	6.37
coral polyp · oil treatment	16	16	3.12	6.32
coral polyp · dispersant treatment	16	16	5.05	16.65
Polyp	10	9	1.79	4.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.