Gene detail

Detailed information of OS493_027967-T1 in Lophelia pertusa

Genomic Location: scaffold_156:452552...455707
NR annotation: KAJ7326116.1, Ankyrin repeat and SOCS box protein 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91ZU0	Ankyrin repeat and SOCS box protein 7 OS=Mus musculus OX=10090 GN=Asb7 PE=2 SV=2
Q9H672	Ankyrin repeat and SOCS box protein 7 OS=Homo sapiens OX=9606 GN=ASB7 PE=1 SV=2
Q9BGT9	Ankyrin repeat and SOCS box protein 7 OS=Macaca fascicularis OX=9541 GN=ASB7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009841 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051637 all species →	Family	Ankyrin repeat domain-containing protein 49	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24180 all species →	CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_027967-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_027967-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

23.6Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.62	14.44
polyp at pH7 6	18	14	7.13	13.92
coral polyp · control treatment	16	16	12.52	17.47
coral polyp · oil and dispersant treatment	16	16	11.75	23.61
coral polyp · oil treatment	16	16	11.47	17.97
coral polyp · dispersant treatment	16	16	5.57	11.52
Polyp	10	10	7.60	15.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.61
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.