Gene detail

Detailed information of OS493_028204-T1 in Lophelia pertusa

Genomic Location: scaffold_160:448326...450136
NR annotation: KAJ7371042.1, hypothetical protein OS493_028204 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001465 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_028204-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013936 all species →	Family	Chloroquine-resistance transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31326 all species →	PROTEIN CLT2, CHLOROPLASTIC	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_028204-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028204-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028204-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

349.1Max TPM

70.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	29.52	47.35
polyp at pH7 6	18	18	41.39	78.59
coral polyp · control treatment	16	16	100.31	238.76
coral polyp · oil and dispersant treatment	16	16	153.55	349.10
coral polyp · oil treatment	16	16	73.17	164.25
coral polyp · dispersant treatment	16	16	65.55	94.09
Polyp	10	10	20.57	65.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	238.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	233.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	349.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	220.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	205.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	176.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	165.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	164.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	65.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.