Gene detail

Detailed information of OS493_028206-T1 in Lophelia pertusa

Genomic Location: scaffold_160:464780...466238
NR annotation: KAJ7371044.1, hypothetical protein OS493_028206 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001465 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_028206-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013936 all species →	Family	Chloroquine-resistance transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31326 all species →	PROTEIN CLT2, CHLOROPLASTIC	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_028206-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028206-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028206-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

4.4Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.30	4.41
polyp at pH7 6	18	14	1.96	3.66
coral polyp · control treatment	16	16	2.29	3.46
coral polyp · oil and dispersant treatment	16	15	1.81	2.60
coral polyp · oil treatment	16	16	2.16	4.05
coral polyp · dispersant treatment	16	14	1.89	3.32
Polyp	10	7	1.52	3.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.