Gene detail

Detailed information of OS493_028226-T1 in Lophelia pertusa

Genomic Location: scaffold_160:743408...744055
NR annotation: KAJ7371063.1, hypothetical protein OS493_028226 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VV72	Multiple inositol polyphosphate phosphatase 1 OS=Drosophila melanogaster OX=7227 GN=Mipp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001803 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00328 all species →	His_Phos_2	Histidine phosphatase superfamily (branch 2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000560 all species →	Family	Histidine phosphatase superfamily, clade-2	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20963 all species →	MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0052745 all species →	Molecular Function	inositol phosphate phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028226-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028226-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

15.8Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.47	9.25
polyp at pH7 6	18	18	3.04	7.46
coral polyp · control treatment	16	15	2.59	11.76
coral polyp · oil and dispersant treatment	16	15	1.25	3.12
coral polyp · oil treatment	16	16	3.64	13.34
coral polyp · dispersant treatment	16	14	0.93	3.34
Polyp	10	9	3.52	15.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.