Detailed information of OS493_028237-T1 in Lophelia pertusa

Genomic Location: scaffold_160:854914...856180
NR annotation: KAJ7371073.1, E3 ubiquitin-protein ligase ubr1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IWV8E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1
Q6WKZ8E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2
O70481E3 ubiquitin-protein ligase UBR1 OS=Mus musculus OX=10090 GN=Ubr1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003166 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18995
all species →		PRT6_CProteolysis_6 C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039164
all species →		FamilyE3 ubiquitin-protein ligase UBR1-likeInterproscan
IPR044046
all species →		DomainE3 ubiquitin-protein ligase UBR-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21497
all species →		UBIQUITIN LIGASE E3 ALPHA-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071596
all species →		Biological Processubiquitin-dependent protein catabolic process via the N-end rule pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_028237-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_028237-T1 global co-expression network
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