Gene detail

Detailed information of OS493_028240-T1 in Lophelia pertusa

Genomic Location: scaffold_160:871707...874052
NR annotation: KAJ7371076.1, Protein Churchill [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJG7	Protein Churchill OS=Bos taurus OX=9913 GN=CHURC1 PE=3 SV=3
Q6DG52	Protein Churchill OS=Mus musculus OX=10090 GN=Churc1 PE=3 SV=1
Q8WUH1	Protein Churchill OS=Homo sapiens OX=9606 GN=CHURC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06573 all species →	Churchill	Churchill protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038543 all species →	Homologous_superfamily	Churchill superfamily	Interproscan
IPR009508 all species →	Family	Transcription activator, Churchill	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31931 all species →	PROTEIN CHURCHILL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0008543 all species →	Biological Process	fibroblast growth factor receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028240-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028240-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

57.6Max TPM

24.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.51	55.31
polyp at pH7 6	18	18	34.53	50.86
coral polyp · control treatment	16	16	20.57	48.72
coral polyp · oil and dispersant treatment	16	16	14.87	45.42
coral polyp · oil treatment	16	16	18.81	28.24
coral polyp · dispersant treatment	16	16	11.79	26.62
Polyp	10	10	40.58	57.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	57.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	55.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	48.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	45.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	41.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	39.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.