Gene detail

Detailed information of OS493_028243-T1 in Lophelia pertusa

Genomic Location: scaffold_161:70007...70597
NR annotation: KAJ7355035.1, hypothetical protein OS493_028243 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010719 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14719 all species →	PID_2	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_028243-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_028243-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028243-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028243-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

15.6Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.29	9.91
polyp at pH7 6	18	18	5.75	15.63
coral polyp · control treatment	16	16	4.22	8.52
coral polyp · oil and dispersant treatment	16	14	1.50	4.06
coral polyp · oil treatment	16	16	5.20	13.21
coral polyp · dispersant treatment	16	16	1.21	2.84
Polyp	10	8	4.34	13.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.