Gene detail

Detailed information of OS493_028382-T1 in Lophelia pertusa

Genomic Location: scaffold_163:475291...497909
NR annotation: KAJ7389919.1, hypothetical protein OS493_028382 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_028382-T1

ATGGCGGCTGAGGAGGAGCAACAAAGAACGGCCCTTCACTGGTTCCGTAAAAATCTTCGGCTTCATGACAACCCTGCATTGTGCGAGGCAATAAAAGGAAGCACTGAACTTTTGGCAGTGTATATCCTTCCACCTTTCATCCCTGATGAAAATATCTCTGCAAACCGATGGAATTTCTTGATTGAATGCTTAGAAGACCTGGATAGTGGTTTAAGAAGCCTTGGCTCTCGGCTTCTTGTTGTGCAAGGATATCCAGCCCAAGTTATTCCTAAACTGCTGAAGAATCTACAGGTTACCAAGTTAACATTTGAAACTGAAAGTGAGCCATTTGGCAAACAGCGAGATGCCGTCATCACTCATCTTGCTGAAAGTGCTGGCGTGGAGGTTTTTTCATGTACTTCACACTCCTTGTACGACACTGAGCAAGTTGTTGAGGTATGTGATAATGAAGCTCCAATGTTGTTTGATGACTTCCTTGATGCCATCGCTTCCATTGGTCCACCGGAATCCCCCGTGGAAACAGTTAATAAAGACATGCTTTCATCTCTGGTAAATGGTGGAAGCAGTTTCACAGATTCCCACATACCATCAATTGAAGATCTTGGAATTGACAAATCGAAGGTGACTTGCAGAGGAACATGGCGTGGCGGAGAGACAGAGGCATTGAAAAAACTAGATGCACTTCTTCAAGAGATGATTGAGAGTGACTTTCAAATCAAGTCTGCCAGTGATGCATTGTTCCGCAGCTTCGAGGACAAGCTGAGCCCATTCCTTAGGTTTGGATGCCTCTCCCCACGGACATTTTACTATGCTCTGTCAGAAACATACCAACGACATAAGCATCGCATCCCTCCATTGTCACTTTTCAACTCATTACTTTGGAGGGACTTCTACTTCATGATTGGTAGCAATAATCCAGCTTTGCACCGAATGGAGAATAACCCTCTGTGCTTGCAAATTGAGTGGGAAGACAATGCCTTTGCTGTGAAACAATGGAAAGAGGGAACAACAGGCTTTCCCTTCATCGATGCTGTTATGCGTCAGCTGCGTCAGGAAGGATGGATTCCAGATGTCGCGCGACAAGTTGTTGGTTCTTTTCTGACAAGAGGATGCATGTGGATTAGTTGGGAGGAAGGGTTTAAGGTCTTTGGCGAGCTCCAGTTAGATGCAGAATGGAGCATAAATGCAGGAAGTTGGATGTCCCTCTCTGGAAGCACTTTTGACCAAGACAGATCTTTCTTCTGTCCAGTAGACATTGGAAAAAAGATTGATCCCACTGGAGAATACATCAGAACCTATGTACCTGAAATGAAATCTTTTCCTACCGAGTACTTGTTTGAACCATGGAAAGCTCCTGAATCCGTGCAGCAGGCTGCTGGATGTTTGGTGGGTAAGGACTATCCCTTACCTCTGGTGGACCACAAAGAACAGAGGAGAGTATGTGTGCAGAGGCTGAAGGAGCTGGCTCACAGTGTTGGTGCTGATAGTCCAGTTGAACAAAGAGGACACACCAGTGTGCACTTGTTTAAAAAAGACCTGAGGCTCCATGACAACCCCACAATGCGTGCCTGTTTGGAAGGTAGTGGCACATTCTATCCGGTGTACATTTTGGACACTGCAGCAGTTAGGCACAGCAAGATCTCAGCCAACCGCTGGAATTTCTTACTGGAGAGCCTGAGGGATCTGGATAGCCAGCTGAAACGGCTGGGATCCCACCTGTTCGTGGTACGTGGAAGGGATGTGGAGGTGCTGCCAAAGCTATTATCGCAGTGGGGAGTAACCCGTCTTAGTTTTGAAAGTGACTGTGAGCCATTTGGGGCTCAAAGAGATGCTGTTATCCGTCACATGGCTGAGAAAGCAGGAGTTGAAGTGTTATGCAAAACATCGCACACACTGTACGAGCCAGGCCAGATTTTACAAGCAAATCAGGGAAATGTACCTATGCTGTTCAAGGACTTTGTCAGAGTGGTAGAAGAGAACAGGCTTAGTACACCCAATCCAGTGAAAGAAGTGGACAGACGATTGATAGGAAGTTGTGTGACACCAGTTGCTGTTGACCACCAGGCAAATTATGGAGTTCCTGAATTGAAGGAACTGGGAGTGAAAGACATCCGATCTGTGACAAGTGCAGCGTTGTGGAGAGGAGGAGAACAAGAGGCACTGAGGAGACTTATCCTTCTTGAGCAAGAGCTGGTGAAAAATGACTTTGAAGATGTGGCATTAAGTGCAGCAACCATGCCATCATCTCCTACCCATTTGAGCCCTTACCTACGATTTGGATGTCTTTCTCCCAGAGTGATGTGGCATCGACTCACAGATTTGTATGGAAAGGCAAAGGGAAAAATGCCACCAGTGTCACTTCATGAACCTCTTCTGCTACGAGAGTTCTTCTTCACCATGGCCAGTGCCAACCCAGGCTTGCATAAGATGGACAACAACCCTCTGTCTGTTCAGTATCCTTGGGAGGAAAATGCTGAGGGTCTCCAGAGGTGGAAGAATGGTACCACTGGTTTTCCATGGATTGATGCAGTAATGCGGCAGTTGCGCATAGAGGGCTGGATTCCTCATGTGGCACGTCAGGCTGTTGGATGTTTCTTGACCAGGGGATGTCTTTGGATCAACTGGGAAGAGGGGTTCAAGGTGTTTGACGAGCTTCAGCTTGATGCAGAGTGGAGTTTGAATGTAGGCAATTGGCTGTGGCTGTCAGGAAGTACTTTTGTGAAAGAGCATGTGCCTTGGTTCTGTCCAGTTGAAGTTGGCAAGAGGATTGATCCAACTGGTGAATATGTGAGGAGATATGTGCCTGAAGTCAAAGGTTTGCCCACAGAGTATTTGTTTGAACCATGGAAAGCTCCTGAATCCGTGCAGCAGGCTGCTGGATGTTTGGTGGGTAAGGACTATCCCCTACCTCTGGTGGACCACAAAGAACAGAGGAGAGTATGTGTGCAGAGGCTGAAGGAGCTGGCTCACAGTGTTGGTGCTGATAGTCCAGTTGAACAAAGAGGACACACCAGTGTGCACTTGTTTAAAAAAGACCTGAGGCTCCATGACAACCCCACAATGCGTGCCTGTTTGGAAGGTAGTGGCACATTCTATCCGGTGTACATTTTGGACACTGCAGCAGTTAGGCACAGCAAGATCTCAGCCAACCGCTGGAATTTCTTACTGGAGAGCCTGAGGGATCTGGATAGCCAGCTGAAACGGCTGGGATCCCACCTGTTCGTGGTACGTGGAAGGGATGTGGAGGTGCTGCCAAAGCTATTATCGCAGTGGGGAGTAACCCGTCTTAGTTTTGAAAGTGACTGTGAGCCATTTGGGGCTCAAAGAGATGCTGTTATCCGTCACATGGCTGAGAAAGCAGGAGTTGAAGTGTTATGCAAAACATCGCACACACTGTACGAGCCAGGCCAGATTTTACAAGCAAATCAGGGAAATGTACCTATGCTGTTCAAGGACTTTGTCAGAGTGGTAGAAGAGAACAGGCTTAGTACACCCAATCCAGTGAAAGAAGTGGACAGACGATTGATAGGAAGTTGTGTGACACCAGTTGCTGTTGACCACCAGGCAAATTATGGAGTTCCTGAATTGAAGGAACTGGGAGTGAAAGACATCCGATCTGTGACAAGTGCAGCGTTGTGGAGAGGAGGAGAACAAGAGGCACTGAGGAGACTTATCCTTCTTGAGCAAGAGCTGGTGAAAAATGACTTTGAAGATGTGGCATTAAGTGCAGCAACCATGCCATCATCTCCTACCCATTTGAGCCCTTACCTACGATTTGGATGTCTTTCTCCCAGAGTGATGTGGCATCGACTCACAGATTTGTATGGAAAGGCAAAGGGAAAAATGCCACCAGTGTCACTTCATGAACCTCTTCTGCTACGAGAGTTCTTCTTCACCATGGCCAGTGCCAACCCAGGCTTGCATAAGATGGACAACAACCCTCTGTCTGTTCAGTATCCTTGGGAGGAAAATGCTGAGGGTCTCCAGAGGTGGAAGAATGGTACCACTGGTTTTCCATGGATTGATGCAGTAATGCGGCAGTTGCGCATAGAGGGCTGGATTCCTCATGTGGCACGTCAGGCTGTTGGATGTTTCTTGACCAGGGGATGTCTTTGGATCAACTGGGAAGAGGGGTTCAAGGTGTTTGACGAGCTTCAGCTTGATGCAGAGTGGAGTTTGAATGTAGGCAATTGGCTGTGGCTGTCAGGAAGTACTTTTGTGAAAGAGCATGTGCCTTGGTTCTGTCCAGTTGAAGTTGGCAAGAGGATTGATCCAACTGGTGAATATGTGAGGAGATATGTGCCTGAAGTCAAAGGTTTGCCCACAGAGTATTTGTTTGAACCATGGAAAGCTCCTGAATCCGTGCAGCAGGCTGCTGGATGTTTGGTGGGTAAGGACTATCCCCTACCTCTGGTGGACCACAAAGAACAGAGGAGAGTATGTGTGCAGAGGCTGAAGGAGCTGGCTCACAGTGTTGGTGCTGATAGTCCAGTTGAACAAAGAGGACACACCAGTGTGCACTTGTTTAAAAAAGACCTGAGGCTCCATGACAACCCCACAATGCGTGCCTGTTTGGAAGGTAGTGGCACATTCTATCCGGTGTACATTTTGGACACTGCAGCAGTTAGGCACAGCAAGATCTCAGCCAACCGCTGGAATTTCTTACTGGAGAGCCTGAGGGATCTGGATAGCCAGCTGAAACGGCTGGGATCCCACCTGTTCGTGGTACGTGGAAGGGATGTGGAGGTGCTGCCAAAGCTATTATCGCAGTGGGGAGTAACCCGTCTTAGTTTTGAAAGTGACTGTGAGCCATTTGGGGCTCAAAGAGATGCTGTTATCCGTCACATGGCTGAGAAAGCAGGAGTTGAAGTGTTATGCAAAACATCGCACACACTGTACGAGCCAGGCCAGATTTTACAAGCAAATCAGGGAAATGTACCTATGCTGTTCAAGGACTTTGTCAGAGTGGTAGAAGAGAACAGGCTTAGTACACCCAATCCAGTGAAAGAAGTGGACAGACGATTGATAGGAAGTTGTGTGACACCAGTTGCTGTTGACCACCAGGCAAATTATGGAGTTCCTGAATTGAAGGAACTGGGAGTGAAAGACATCCGATCTGTGACAAGTGCAGCGTTGTGGAGAGGAGGAGAACAAGAGGCACTGAGGAGACTTATCCTTCTTGAGCAAGAGCTGGTGAAAAATGACTTTGAAGATGTGGCATTAAGTGCAGCAACCATGCCATCATCTCCTACCCATTTGAGCCCTTACCTACGATTTGGATGTCTTTCTCCCAGAGTGATGTGGCATCGACTCACAGATTTGTATGGAAAGGCAAAGGGAAAAATGCCACCAGTGTCACTTCATGAACCTCTTCTGCTACGAGAGTTCTTCTTCACCATGGCCAGTGCCAACCCAGGCTTGCATAAGATGGACAACAACCCTCTGTCTGTTCAGTATCCTTGGGAGGAAAATGCTGAGGGTCTCCAGAGGTGGAAGAATGGTACCACTGGTTTTCCATGGATTGATGCAGTAATGCGGCAGTTGCGCATAGAGGGCTGGATTCCTCATGTGGCACGTCAGGCTGTTGGATGTTTCTTGACCAGGGGATGTCTTTGGATCAACTGGGAAGAGGGGTTCAAGGTGTTTGACGAGCTTCAGCTTGATGCAGAGTGGAGTTTGAATGTAGGCAATTGGCTGTGGCTGTCAGGAAGTACTTTTGTGAAAGAGCATGTGCCTTGGTTCTGTCCAGTTGAAGTTGGCAAGAGGATTGATCCAACTGGTGAATATGTGAGGAGATATGTGCCTGAAGTCAAAGGTTTGCCCACAGAGTATTTGTTTGAACCATGGAAAGCTCCTGAATCCGTGCAGCAGGCTGCTGGATGTTTGGTGGGTAAGGACTATCCCCTACCTCTGGTGGACCACAAAGAACAGAGGAGAGTATGTGTGCAGAGGCTGAAGGAGCTGGCTCACAGTGTTGGTGCTGATAGTCCAGTTGAACAAAGAGGACACACCAGTGTGCACTTGTTTAAAAAAGACCTGAGGCTCCATGACAACCCCACAATGCGTGCCTGTTTGGAAGGTAGTGGCACATTCTATCCGGTGTACATTTTGGACACTGCAGCAGTTAGGCACAGCAAGATCTCAGCCAACCGCTGGAATTTCTTACTGGAGAGCCTGAGGGATCTGGATAGCCAGCTGAAACGGCTGGGATCCCACCTGTTCGTGGTACGTGGAAGGGATGTGGAGGTGCTGCCAAAGCTATTATCGCAGTGGGGAGTAACCCGTCTTAGTTTTGAAAGTGACTGTGAGCCATTTGGGGCTCAAAGAGATGCTGTTATCCGTCACATGGCTGAGAAAGCAGGAGTTGAAGTGTTATGCAAAACATCGCACACACTGTACGAGCCAGGCCAGATTTTACAAGCAAATCAGGGAAATGTACCTATGCTGTTCAAGGACTTTGTCAGAGTGGTAGAAGAGAACAGGCTTAGTACACCCAATCCAGTGAAAGAAGTGGACAGACGATTGATAGGAAGTTGTGTGACACCAGTTGCTGTTGACCACCAGGCAAATTATGGAGTTCCTGAATTGAAGGAACTGGGAGTGAAAGACATCCGATCTGTGACAAGTGCAGCGTTGTGGAGAGGAGGAGAACAAGAGGCACTGAGGAGACTTATCCTTCTTGAGCAAGAGCTGGTGAAAAATGACTTTGAAGATGTGGCATTAAGTGCAGCAACCATGCCATCATCTCCTACCCATTTGAGCCCTTACCTACGATTTGGATGTCTTTCTCCCAGAGTGATGTGGCATCGACTCACAGATTTGTATGGAAAGGCAAAGGGAAAAATGCCACCAGTGTCACTTCATGAACCTCTTCTGCTACGAGAGTTCTTCTTCACCATGGCCAGTGCCAACCCAGGCTTGCATAAGATGGACAACAACCCTCTGTCTGTTCAGTATCCTTGGGAGGAAAATGCTGAGGGTCTCCAGAGGTGGAAGAATGGTACCACTGGTTTTCCATGGATTGATGCAGTAATGCGGCAGTTGCGCATAGAGGGCTGGATTCCTCATGTGGCACGTCAGGCTGTTGGATGTTTCTTGACCAGGGGATGTCTTTGGATCAACTGGGAAGAGGGGTTCAAGGTGTTTGACGAGCTTCAGCTTGATGCAGAGTGGAGTTTGAATGTAGGCAATTGGCTGTGGCTGTCAGGAAGTACTTTTGTGAAAGAGCATGTGCCTTGGTTCTGTCCAGTTGAAGTTGGAAAGAAGATGGATCCAACTGGTGAATATGTGAGGAAATTTGTTCCAGAACTCAAGAGATTGCCTCTTAAGTACTTGTTTGAACCATGGAGAGCACCTTTAAAAGTACAAAAAGCTGCTAGGTGCATTGTGGGTGACGATTATCCTGAACCTGTGACTGATCACAAAGAACAGCGGAAGATCTGTGTACAACGCATGAAAGATCTCTGCATCTCTTTGAATATCTCAGGTCATAAAAGCCTCCATTGGTTCAGAAAGGACCTCAGACTCCACGACAATCCCAGTCTGCGCGAGTGTCTTGCAGACAGTAAGGTGTTTTATGGGGTGTACTTCTTGGAGTGTTCGTCTGATGAGATGATGACTGTCAGTCCAAACCGCTGGCGTTTCCTGCTTGAATCGCTTCAAGAGCTGGACAGGAGTCTGGCTCAGTTTGGGTCACGTCTTTTCATACTGAAGGGAAGACCTATTGACATCTTGCCTGCACTTTTTAAAGAGTGGGACATCACTCGGCTGTCTTTCGAGGTTGATTGTGAGCCATGTTGTAAGACCAGGGATGTAGTCATCACTGGTCTTGCTGAACAAACTGGAATTGAAGTGATAAGCCGTGTTTCACACACCCTCTATGATAGTGAAGCCCTGTTGATGTCGACTGAAGAAAGAGCACCACAGCTGTTTTCCGAGTTTAAGGAGCTTGTATCACAGCAAGAATGGCCACAGATGCCGGCACCAAGGGTCGATAGAAAGTTGTTTGGTTCGTGTGTGACTCCTGTAGGTAGAGACCATACCCAACAGTATGGAGTGCCTGCACTAGAGGAGATGAGTGTCCAAAAGCCACCTGCTACTGGCTCTTGGTTATACCAAGGTGGAGAGCACGAAGCTTTAGTGAGAATGGAAGCAGCTTTGCGTGAGATGATACAGAATGGCTTCTCTGAATCACCATTAACTGCAAGTTCTCTGATGACGTCAACAAGTCACTTGAGCCCCTACCTGAGGTTGGGCTGCCTGTCGCCCAGGCTCCTTTTCCAGCGAATGACTGAGGAATATATAAAGAGCAAGACTTTGAACCCGCCTCTGGAGCTGTACAATAAACTATTGTGGCGTGAGTTCTTCTTTGTTGCGGGAAGCCAAGTGCCAGATGCACACGAGATGGTCAACAATCCACTGAGTCTTCAGATTCCTTGGGAAGATTCTGCAGAGTATCTTGACAAATGGAAACAGGGTATGACTGGTTTTCCATGGATTGACGCCATTATGAGGCAACTCCGCTCAGAAGGATGGATTCACGACATTGCACGAAGAGCTGTTGGCTCCTTCTTGACACGTGGTTGCCTGTGGATTAACTGGGAAGAAGGGTTTAAGGTGTTTGACGAGCTTCAGCTTGATGCAGAGTGGAGTCTGAATGTAGGCAATTGGCTGTGGTTGTCAGGAAGTACTTTTGTGCAAGAGCATGTGCCTTGGTTCTGTCCAGTTGAAGTTGGAAAGAAGATTGATCCAACTGGTGTTTTTGTCAGGAAATATGTGCCAGAGGTGAGAAACCTGCCTACAGATTTCATCTTTGAGCCGTGGTTGGCACCACGTGACCTCCAAGAGTCTTGCGGTTGTGTGATTGGTCAAGATTATCCTACCCCACTTGTTGATCACAGGCAACAACGCGTTGTGTGTGTCCAGCGGCTTCGTGACCTGGCCTTTAAGTTAACTGGTAACTGA

Transcript

OS493_028382-T1

Protein

OS493_028382-T1

MAAEEEQQRTALHWFRKNLRLHDNPALCEAIKGSTELLAVYILPPFIPDENISANRWNFLIECLEDLDSGLRSLGSRLLVVQGYPAQVIPKLLKNLQVTKLTFETESEPFGKQRDAVITHLAESAGVEVFSCTSHSLYDTEQVVEVCDNEAPMLFDDFLDAIASIGPPESPVETVNKDMLSSLVNGGSSFTDSHIPSIEDLGIDKSKVTCRGTWRGGETEALKKLDALLQEMIESDFQIKSASDALFRSFEDKLSPFLRFGCLSPRTFYYALSETYQRHKHRIPPLSLFNSLLWRDFYFMIGSNNPALHRMENNPLCLQIEWEDNAFAVKQWKEGTTGFPFIDAVMRQLRQEGWIPDVARQVVGSFLTRGCMWISWEEGFKVFGELQLDAEWSINAGSWMSLSGSTFDQDRSFFCPVDIGKKIDPTGEYIRTYVPEMKSFPTEYLFEPWKAPESVQQAAGCLVGKDYPLPLVDHKEQRRVCVQRLKELAHSVGADSPVEQRGHTSVHLFKKDLRLHDNPTMRACLEGSGTFYPVYILDTAAVRHSKISANRWNFLLESLRDLDSQLKRLGSHLFVVRGRDVEVLPKLLSQWGVTRLSFESDCEPFGAQRDAVIRHMAEKAGVEVLCKTSHTLYEPGQILQANQGNVPMLFKDFVRVVEENRLSTPNPVKEVDRRLIGSCVTPVAVDHQANYGVPELKELGVKDIRSVTSAALWRGGEQEALRRLILLEQELVKNDFEDVALSAATMPSSPTHLSPYLRFGCLSPRVMWHRLTDLYGKAKGKMPPVSLHEPLLLREFFFTMASANPGLHKMDNNPLSVQYPWEENAEGLQRWKNGTTGFPWIDAVMRQLRIEGWIPHVARQAVGCFLTRGCLWINWEEGFKVFDELQLDAEWSLNVGNWLWLSGSTFVKEHVPWFCPVEVGKRIDPTGEYVRRYVPEVKGLPTEYLFEPWKAPESVQQAAGCLVGKDYPLPLVDHKEQRRVCVQRLKELAHSVGADSPVEQRGHTSVHLFKKDLRLHDNPTMRACLEGSGTFYPVYILDTAAVRHSKISANRWNFLLESLRDLDSQLKRLGSHLFVVRGRDVEVLPKLLSQWGVTRLSFESDCEPFGAQRDAVIRHMAEKAGVEVLCKTSHTLYEPGQILQANQGNVPMLFKDFVRVVEENRLSTPNPVKEVDRRLIGSCVTPVAVDHQANYGVPELKELGVKDIRSVTSAALWRGGEQEALRRLILLEQELVKNDFEDVALSAATMPSSPTHLSPYLRFGCLSPRVMWHRLTDLYGKAKGKMPPVSLHEPLLLREFFFTMASANPGLHKMDNNPLSVQYPWEENAEGLQRWKNGTTGFPWIDAVMRQLRIEGWIPHVARQAVGCFLTRGCLWINWEEGFKVFDELQLDAEWSLNVGNWLWLSGSTFVKEHVPWFCPVEVGKRIDPTGEYVRRYVPEVKGLPTEYLFEPWKAPESVQQAAGCLVGKDYPLPLVDHKEQRRVCVQRLKELAHSVGADSPVEQRGHTSVHLFKKDLRLHDNPTMRACLEGSGTFYPVYILDTAAVRHSKISANRWNFLLESLRDLDSQLKRLGSHLFVVRGRDVEVLPKLLSQWGVTRLSFESDCEPFGAQRDAVIRHMAEKAGVEVLCKTSHTLYEPGQILQANQGNVPMLFKDFVRVVEENRLSTPNPVKEVDRRLIGSCVTPVAVDHQANYGVPELKELGVKDIRSVTSAALWRGGEQEALRRLILLEQELVKNDFEDVALSAATMPSSPTHLSPYLRFGCLSPRVMWHRLTDLYGKAKGKMPPVSLHEPLLLREFFFTMASANPGLHKMDNNPLSVQYPWEENAEGLQRWKNGTTGFPWIDAVMRQLRIEGWIPHVARQAVGCFLTRGCLWINWEEGFKVFDELQLDAEWSLNVGNWLWLSGSTFVKEHVPWFCPVEVGKRIDPTGEYVRRYVPEVKGLPTEYLFEPWKAPESVQQAAGCLVGKDYPLPLVDHKEQRRVCVQRLKELAHSVGADSPVEQRGHTSVHLFKKDLRLHDNPTMRACLEGSGTFYPVYILDTAAVRHSKISANRWNFLLESLRDLDSQLKRLGSHLFVVRGRDVEVLPKLLSQWGVTRLSFESDCEPFGAQRDAVIRHMAEKAGVEVLCKTSHTLYEPGQILQANQGNVPMLFKDFVRVVEENRLSTPNPVKEVDRRLIGSCVTPVAVDHQANYGVPELKELGVKDIRSVTSAALWRGGEQEALRRLILLEQELVKNDFEDVALSAATMPSSPTHLSPYLRFGCLSPRVMWHRLTDLYGKAKGKMPPVSLHEPLLLREFFFTMASANPGLHKMDNNPLSVQYPWEENAEGLQRWKNGTTGFPWIDAVMRQLRIEGWIPHVARQAVGCFLTRGCLWINWEEGFKVFDELQLDAEWSLNVGNWLWLSGSTFVKEHVPWFCPVEVGKKMDPTGEYVRKFVPELKRLPLKYLFEPWRAPLKVQKAARCIVGDDYPEPVTDHKEQRKICVQRMKDLCISLNISGHKSLHWFRKDLRLHDNPSLRECLADSKVFYGVYFLECSSDEMMTVSPNRWRFLLESLQELDRSLAQFGSRLFILKGRPIDILPALFKEWDITRLSFEVDCEPCCKTRDVVITGLAEQTGIEVISRVSHTLYDSEALLMSTEERAPQLFSEFKELVSQQEWPQMPAPRVDRKLFGSCVTPVGRDHTQQYGVPALEEMSVQKPPATGSWLYQGGEHEALVRMEAALREMIQNGFSESPLTASSLMTSTSHLSPYLRLGCLSPRLLFQRMTEEYIKSKTLNPPLELYNKLLWREFFFVAGSQVPDAHEMVNNPLSLQIPWEDSAEYLDKWKQGMTGFPWIDAIMRQLRSEGWIHDIARRAVGSFLTRGCLWINWEEGFKVFDELQLDAEWSLNVGNWLWLSGSTFVQEHVPWFCPVEVGKKIDPTGVFVRKYVPEVRNLPTDFIFEPWLAPRDLQESCGCVIGQDYPTPLVDHRQQRVVCVQRLRDLAFKLTGN

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32Q86	Cryptochrome-1 OS=Rattus norvegicus OX=10116 GN=Cry1 PE=1 SV=1
P97784	Cryptochrome-1 OS=Mus musculus OX=10090 GN=Cry1 PE=1 SV=1
Q16526	Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001198 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03441 all species →	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan
PF00875 all species →	DNA_photolyase	DNA photolyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006050 all species →	Domain	DNA photolyase, N-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR036134 all species →	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR036155 all species →	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan
IPR005101 all species →	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR002081 all species →	Family	Cryptochrome/DNA photolyase class 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455 all species →	CRYPTOCHROME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153 all species →	Biological Process	entrainment of circadian clock by photoperiod	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028382-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028382-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

96.4Max TPM

28.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	43.48	96.40
polyp at pH7 6	18	18	35.86	88.66
coral polyp · control treatment	16	16	24.73	60.64
coral polyp · oil and dispersant treatment	16	16	18.33	50.34
coral polyp · oil treatment	16	16	27.85	55.11
coral polyp · dispersant treatment	16	16	21.50	50.61
Polyp	10	10	18.03	36.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.43
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.10
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.09

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.