Gene detail

Detailed information of OS493_028383-T1 in Lophelia pertusa

Genomic Location: scaffold_163:512434...516801
NR annotation: KAJ7389920.1, 2 iron, 2 sulfur cluster binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8SZA8	Adrenodoxin-like protein 2, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Fdx2 PE=2 SV=1
P13216	Adrenodoxin, mitochondrial (Fragment) OS=Gallus gallus OX=9031 GN=FDX1 PE=1 SV=1
P29330	Adrenodoxin OS=Ovis aries OX=9940 GN=FDX1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002135 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR001055 all species →	Family	Adrenodoxin-like	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR018298 all species →	Binding_site	Adrenodoxin, iron-sulphur binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23426 all species →	FERREDOXIN/ADRENODOXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0140647 all species →	Biological Process	P450-containing electron transport chain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028383-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028383-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

72.3Max TPM

23.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.17	30.05
polyp at pH7 6	18	17	17.88	33.22
coral polyp · control treatment	16	16	28.57	49.26
coral polyp · oil and dispersant treatment	16	16	41.39	72.26
coral polyp · oil treatment	16	16	26.43	44.96
coral polyp · dispersant treatment	16	16	23.23	64.31
Polyp	10	9	13.86	25.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.