Gene detail

Detailed information of OS493_028384-T1 in Lophelia pertusa

Genomic Location: scaffold_163:518608...525457
NR annotation: KAJ7389921.1, hypothetical protein OS493_028384 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008612 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_028384-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042319 all species →	Family	Glycoprotein integral membrane protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28549 all species →	GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_028384-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028384-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028384-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

820.6Max TPM

211.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	126.56	164.49
polyp at pH7 6	18	18	127.26	177.08
coral polyp · control treatment	16	16	238.88	391.43
coral polyp · oil and dispersant treatment	16	16	334.19	489.29
coral polyp · oil treatment	16	16	188.80	344.55
coral polyp · dispersant treatment	16	16	329.20	820.61
Polyp	10	10	122.59	239.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	164.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	164.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	160.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	159.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	153.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	149.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	177.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	175.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	173.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	165.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	153.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	152.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	105.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	391.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	361.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	351.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	336.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	293.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	273.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	261.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	259.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	223.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	199.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	489.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	489.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	463.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	434.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	413.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	379.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	347.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	332.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	318.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	313.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	313.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	269.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	246.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	231.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	192.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	344.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	298.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	231.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	231.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	226.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	211.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	202.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	191.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	189.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	181.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	820.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	456.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	421.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	413.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	354.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	333.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	330.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	323.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	318.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	310.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	301.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	291.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	256.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	248.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	239.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	144.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	133.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	127.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	113.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	109.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	98.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	91.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	86.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	82.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.