Gene detail

Detailed information of OS493_028406-T1 in Lophelia pertusa

Genomic Location: scaffold_163:751788...757236
NR annotation: KAJ7389938.1, hypothetical protein OS493_028406 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010096 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16796 all species →	Microtub_bd	Microtubule binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031852 all species →	Domain	Spindle pole body-associated protein Vik1/Cik1, microtubule binding domain	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47972 all species →	KINESIN-LIKE PROTEIN KLP-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028406-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028406-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

18.6Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.82	7.26
polyp at pH7 6	18	18	4.03	6.84
coral polyp · control treatment	16	16	7.63	18.56
coral polyp · oil and dispersant treatment	16	16	7.87	14.94
coral polyp · oil treatment	16	16	5.70	10.61
coral polyp · dispersant treatment	16	16	5.80	10.40
Polyp	10	10	2.18	3.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.56
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.60
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.