Gene detail

Detailed information of OS493_028410-T1 in Lophelia pertusa

Genomic Location: scaffold_163:772373...774011
NR annotation: KAJ7389941.1, CAAX prenyl protease 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75844	CAAX prenyl protease 1 homolog OS=Homo sapiens OX=9606 GN=ZMPSTE24 PE=1 SV=2
Q80W54	CAAX prenyl protease 1 homolog OS=Mus musculus OX=10090 GN=Zmpste24 PE=1 SV=2
Q3Y6B8	CAAX prenyl protease 1 homolog OS=Taenia solium OX=6204 GN=TsSte24p PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01435 all species →	Peptidase_M48	Peptidase family M48	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001915 all species →	Domain	Peptidase M48	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10120 all species →	CAAX PRENYL PROTEASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0071586 all species →	Biological Process	CAAX-box protein processing	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028410-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028410-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

66.9Max TPM

29.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.97	44.64
polyp at pH7 6	18	18	32.43	44.46
coral polyp · control treatment	16	16	32.72	66.94
coral polyp · oil and dispersant treatment	16	16	28.49	41.49
coral polyp · oil treatment	16	16	29.72	43.92
coral polyp · dispersant treatment	16	16	18.38	27.60
Polyp	10	10	29.75	41.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.16
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	38.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	36.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	35.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.